8 results found

Tushar Pathare, Sandeep Patil, Frank Lee

Large-scale genomics pipelines generate petabyte-class datasets whose I/O access patterns are governed by discrete biological processingstages rather than by file recency or age. Conventional time-bas...

The Journal of Supercomputing 2026-04-23 rs-8987940
IBM GPFS IBM Spectrum Scale Integrated Lifecycle Management genomics bioinformatics storage tiering workflow metadata NVMe HPC data lifecycle management POSIX extended attributes xattr Nextflow Snakemake GATK variant calling sequencing autonomous storage policy

Ruichen Wang, Siqi Li, Xiao Yang, Honglan Zhu, Jianliu Wang, Xudong Liang

OBJECTIVE To investigate whether different types of vaginitis have distinct microbiota in the female reproductive tract, and whether bacteria may have specific functions.METHODS This is a cross-sectio...

Current Microbiology 2026-04-23 rs-9061730
Vaginal microbiota metagenomic sequencing vaginal inflammatory diseases aerobic vaginitis mixed vaginitis

Ece Erdem Altınyürek, Veli Özgen Öztürk

Background Gastritis is characterized by alterations in the gastric microbiota. This dysbiosis in the stomach may affect immune system regulation as well as influence the oral microbiota. Periodontal ...

BMC Oral Health 2026-04-22 rs-8849413
Periodontitis gastritis dysbiosis next generation sequencing metagenomic microbiome

Sara Razi, Ali Soleimani, Mehrshad Zeinalabedini, Mohammad Reza Vazifeshenas, Pedro Martínez-Gómez

Pomegranate (Punica granatum L.) is a perennial fruit tree native to Iran and the Himalayan Mountains in northern India. In this study, genotyping-by-sequencing (GBS) approach was used for calling sin...

Plant Molecular Biology Reporter 2026-04-22 rs-8783530
Pomegranate Molecular marker linkage disequilibrium mapping Genotyping-by-sequencing Single nucleotide polymorphisms

Md Moshiur Rahman,†, Sabbir Alam Zia,†, Abdullah Al Mamun*

Commensal Escherichia coli in livestock represent important reservoirs of antimicrobial resistance (AMR) and virulence determinants with potential zoonotic implications. However, genomic data integrat...

Research Square 2026-04-21 rs-9459205
Escherichia coli Multidrug resistance Whole-genome sequencing One Health Bovine feces Virulence genes IncF plasmids MLST Bangladesh

Pitithat Puranachot, Thivaratana Sinthuwiwat, Priyavudh Herabutya, Kanthida Jangyubol, Bongkod Petcharat, Jutamas Yimnoon, Jitsopin Phadungsut, Chayanee Samdaengpan, Chumut Phanthunane

Background: Accurately predicting treatment outcomes in patients with advanced non-small cell lung cancer (NSCLC) remains a significant clinical challenge. While circulating tumor DNA (ctDNA) within p...

BMC Personalized Medicine 2026-04-21 rs-9258115
Liquid biopsy monitoring Cell-free DNA Non-small cell lung cancer Progression-free survival Copy-number alterations cfDNA fragmentation Low-coverage whole-genome sequencing
Research Article under-review

Lactylation Dynamics in Myxozoan Proteins

Amr A. G. Ibrahim, Juliana Naldoni, Antônio A. M. Maia, Juliano R. Sangalli, Caroline M. Meira, Rayline T. A. Figueredo, Beth Okamura, Paul F. Long, Edson A. Adriano

Lactylation has recently emerged as a novel post-translational modification with critical implications for gene regulation and host–parasite interactions, as demonstrated in species of Plasmodium and ...

Discover Genetics and Evolution 2026-04-20 rs-9266461
Myxozoa Epigenetics Oxford Nanopore sequencing Host–parasite interactions Cnidaria

Li Lin, Xia-xi Li, You-Jia Ma, Qiao-Ping Xu, Yong Xia, Yu Li, Qing-Hua Liu, Ke-Yu Lu, Wen-Hua He, Dan Chen, Yang Leng, Bo-Wei Han, Ling Ji

Inflammatory bowel disease (IBD) diagnosis is a complex process that relies on the integration of multiple clinical assessments, including endoscopy and histopathology. However, the absence of highly ...

Research Square 2026-04-20 rs-9285599
B-Cell Receptor Inflammatory Bowel Disease Next Generation Sequencing
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